obsidian-mcp-server-enhanced

Obsidian MCP Server - Enhanced

Enhanced Obsidian MCP Server with Claude.ai Remote Integration, Tailscale Support, and Advanced Query Capabilities!

🔥 Enhanced Fork Notice: This is an enhanced version of the excellent cyanheads/obsidian-mcp-server with additional features specifically tailored for remote Claude.ai integration, advanced task querying, and security via Tailscale.

An MCP (Model Context Protocol) server providing comprehensive access to your Obsidian vault. Enables LLMs and AI agents to read, write, search, and manage your notes and files through the Obsidian Local REST API plugin.

Built on the cyanheads/mcp-ts-template, this server follows a modular architecture with robust error handling, logging, and security features.

🚀 Enhanced Features (This Fork)

🏛️ Multi-Vault Support

Simultaneous access to multiple Obsidian vaults through a single MCP server:

• Multiple Vault Management: Connect to multiple Obsidian instances on different ports simultaneously
• Vault-Specific Routing: Tools automatically route to the correct vault based on vault parameter
• Individual Authentication: Separate API keys for each vault with centralized MCP authentication
• Backwards Compatible: Existing single-vault configurations continue to work unchanged
• Dynamic Configuration: JSON-based vault configuration with validation and error handling

🌐 Claude.ai Remote Integration

Perfect integration with Claude.ai's Remote MCP feature:

• Stateless HTTP Mode: Dedicated stateless transport for Claude.ai compatibility (MCP_HTTP_STATELESS=true)
• Session-Based Mode: Traditional session management for other MCP clients
• Simplified Authentication: Uses dedicated MCP_AUTH_KEY for server access
• Zero Configuration: Works out-of-the-box with Claude.ai Remote MCP servers
• Production Ready: Enterprise-grade stability and error handling

🔒 Tailscale Secure Remote Access

Access your Obsidian vault securely from anywhere:

• Tailscale Funnel Integration: Secure HTTPS endpoints with automatic certificates
• End-to-End Encryption: All traffic encrypted through Tailscale network
• No Port Forwarding: Zero network configuration required
• Access Control: Built-in Tailscale ACL support for enterprise security

📊 Enhanced Task & Query System

Advanced querying capabilities beyond the original:

• Tasks Plugin Integration: Deep integration with Obsidian Tasks plugin
• Advanced Date Parsing: Natural language date recognition
• Priority Detection: Visual and text-based priority parsing
• Multiple Output Formats: Table, list, and summary views

🔧 Production Monitoring & Reliability

Enterprise-grade monitoring and auto-restart capabilities:

• Health Check Script: Comprehensive component validation (scripts/health-check.sh)
• Intelligent Monitoring: Auto-restart with process lifecycle management (scripts/monitor-mcp.sh)
• macOS Auto-Start: Launch agent configuration for system startup (scripts/setup-autostart.sh)
• Dynamic Port Management: Automatic port conflict resolution (3010-3013 range)
• Enhanced Logging: Detailed connection debugging and API key validation

🚀 Core Capabilities: Obsidian Tools 🛠️

This server equips your AI with specialized tools to interact with your Obsidian vault:

Tool Name	Description	Key Features
obsidian_read_file	Retrieves the content and metadata of a specified file.	- Read in markdown or json format. - Case-insensitive path fallback. - Includes file stats (creation/modification time).
obsidian_update_file	Modifies notes using whole-file operations.	- append, prepend, or overwrite content. - Can create files if they don't exist. - Targets files by path, active note, or periodic note.
obsidian_search_replace	Performs search-and-replace operations within a target note.	- Supports string or regex search. - Options for case sensitivity, whole word, and replacing all occurrences.
obsidian_global_search	Performs a search across the entire vault.	- Text or regex search. - Filter by path and modification date. - Paginated results.
obsidian_list_files	Lists files and subdirectories within a specified vault folder.	- Filter by file extension or name regex. - Provides a formatted tree view of the directory.
obsidian_manage_frontmatter	Atomically manages a note's YAML frontmatter.	- get, set, or delete frontmatter keys. - Avoids rewriting the entire file for metadata changes.
obsidian_manage_tags	Adds, removes, or lists tags for a note.	- Manages tags in both YAML frontmatter and inline content.
obsidian_delete_file	Permanently deletes a specified file from the vault.	- Case-insensitive path fallback for safety.
obsidian_dataview_query	Execute Dataview DQL queries against your vault.	- Run TABLE, LIST queries using Dataview syntax. - Query notes by tags, frontmatter, dates. - Generate reports and analytics.
obsidian_task_query	Search and analyze tasks across your vault.	- Filter by status, date ranges, priorities. - Multiple output formats. - Extract task metadata (due dates, tags).

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Table of Contents

| Overview | Features | Installation | | Configuration | Project Structure | Vault Cache Service | | Tools | Resources | Development | License |

Overview

The Obsidian MCP Server acts as a bridge, allowing applications (MCP Clients) that understand the Model Context Protocol (MCP) – like advanced AI assistants (LLMs), IDE extensions, or custom scripts – to interact directly and safely with your Obsidian vault.

Instead of complex scripting or manual interaction, your tools can leverage this server to:

• Automate vault management: Read notes, update content, manage frontmatter and tags, search across files, list directories, and delete files programmatically.
• Integrate Obsidian into AI workflows: Enable LLMs to access and modify your knowledge base as part of their research, writing, or coding tasks.
• Build custom Obsidian tools: Create external applications that interact with your vault data in novel ways.

Built on the robust mcp-ts-template, this server provides a standardized, secure, and efficient way to expose Obsidian functionality via the MCP standard. It achieves this by communicating with the powerful Obsidian Local REST API plugin running inside your vault.

Developer Note: This repository includes a .clinerules file that serves as a developer cheat sheet for your LLM coding agent with quick reference for the codebase patterns, file locations, and code snippets.

Features

Core Utilities

Leverages the robust utilities provided by the mcp-ts-template:

• Logging: Structured, configurable logging (file rotation, console, MCP notifications) with sensitive data redaction.
• Error Handling: Centralized error processing, standardized error types (McpError), and automatic logging.
• Configuration: Environment variable loading (dotenv) with comprehensive validation.
• Input Validation/Sanitization: Uses zod for schema validation and custom sanitization logic.
• Request Context: Tracking and correlation of operations via unique request IDs.
• Type Safety: Strong typing enforced by TypeScript and Zod schemas.
• HTTP Transport Option: Native Node.js HTTP server with session management, CORS support, and API key authentication.

Obsidian Integration

• Obsidian Local REST API Integration: Communicates directly with the Obsidian Local REST API plugin via HTTP requests managed by the ObsidianRestApiService.
• Comprehensive Command Coverage: Exposes key vault operations as MCP tools (see Tools section).
• Vault Interaction: Supports reading, updating (append, prepend, overwrite), searching (global text/regex, search/replace), listing, deleting, and managing frontmatter and tags.
• Targeting Flexibility: Tools can target files by path, the currently active file in Obsidian, or periodic notes (daily, weekly, etc.).
• Vault Cache Service: An intelligent in-memory cache that improves performance and resilience. It caches vault content, provides a fallback for the global search tool if the live API fails, and periodically refreshes to stay in sync.
• Safety Features: Case-insensitive path fallbacks for file operations, clear distinction between modification types (append, overwrite, etc.).

Installation

Prerequisites

1. Obsidian: You need Obsidian installed.
2. Obsidian Local REST API Plugin: Install and enable the Obsidian Local REST API plugin within your Obsidian vault.
3. API Key: Configure an API key within the Local REST API plugin settings in Obsidian. You will need this key to configure the server.
4. Node.js & npm: Ensure you have Node.js (v18 or later recommended) and npm installed.
5. Tailscale (for remote access): Install Tailscale and enable Tailscale Funnel for secure remote Claude.ai integration.

💡 Quick Setup: For automatic startup on boot, see the Auto-Start Setup Guide after installation.

Installation

1. Clone this enhanced repository:

   git clone https://github.com/BoweyLou/obsidian-mcp-server-enhanced.git
   cd obsidian-mcp-server-enhanced
   

2. Install dependencies:

   npm install
   

3. Build the project:

   npm run build
   

   This compiles the TypeScript code to JavaScript in the dist/ directory and makes the entry point executable.

Configuration

Environment Variables

Configure the server using environment variables.

These variables must be set in the MCP client configuration (e.g., cline_mcp_settings.json) or in your environment before starting the server (if running directly).

If running directly, they can be set in a .env file in the project root or directly in your environment.

Variable	Description	Required	Default
MCP_AUTH_KEY	Authentication key for Claude.ai Remote MCP access. Generate with openssl rand -hex 32	Yes (Remote)	undefined
OBSIDIAN_VAULTS	JSON array of vault configurations for multi-vault mode.	Yes (Multi)	undefined
OBSIDIAN_API_KEY	API Key from Obsidian plugin (single-vault mode only).	Yes (Single)	undefined
OBSIDIAN_BASE_URL	Base URL of Obsidian API (single-vault mode only).	Yes (Single)	http://127.0.0.1:27123
MCP_TRANSPORT_TYPE	Server transport: stdio or http.	No	http
MCP_HTTP_PORT	Port for the HTTP server.	No	3010
MCP_HTTP_HOST	Host for the HTTP server.	No	127.0.0.1
MCP_HTTP_STATELESS	Enable stateless mode for Claude.ai compatibility.	No	false
MCP_ALLOWED_ORIGINS	Comma-separated origins for CORS. Set for production.	No	(none)
MCP_LOG_LEVEL	Logging level (debug, info, error, etc.).	No	info
OBSIDIAN_VERIFY_SSL	Set to false to disable SSL verification.	No	true
OBSIDIAN_ENABLE_CACHE	Set to true to enable the in-memory vault cache.	No	true
OBSIDIAN_CACHE_REFRESH_INTERVAL_MIN	Refresh interval for the vault cache in minutes.	No	10

Multi-Vault Configuration

The server supports both single-vault (backwards compatible) and multi-vault modes:

Single-Vault Mode (Legacy)

# .env file
MCP_AUTH_KEY=your-generated-mcp-auth-key
OBSIDIAN_API_KEY=your-obsidian-plugin-api-key
OBSIDIAN_BASE_URL=http://127.0.0.1:27123
MCP_TRANSPORT_TYPE=http
MCP_HTTP_STATELESS=true

Multi-Vault Mode (Recommended)

# .env file
MCP_AUTH_KEY=your-generated-mcp-auth-key
OBSIDIAN_VAULTS='[
  {
    "id": "work",
    "name": "Work Vault", 
    "apiKey": "work-vault-api-key",
    "baseUrl": "http://127.0.0.1:27123",
    "verifySsl": false
  },
  {
    "id": "personal",
    "name": "Personal Vault",
    "apiKey": "personal-vault-api-key", 
    "baseUrl": "http://127.0.0.1:27122",
    "verifySsl": false
  }
]'
MCP_TRANSPORT_TYPE=http
MCP_HTTP_STATELESS=true

Setup Process

1. Generate MCP Auth Key: openssl rand -hex 32
2. Configure Multiple Obsidian Instances: Install Local REST API plugin on different ports
3. Get API Keys: Extract API keys from each Obsidian instance's plugin settings
4. Configure Vaults: Update .env with OBSIDIAN_VAULTS JSON configuration
5. Start Server: npm run start:http
6. Access via Claude.ai: Use your Tailscale URL with MCP_AUTH_KEY

Connecting to the Obsidian API

Single-Vault Mode

To connect in single-vault mode, configure the base URL (OBSIDIAN_BASE_URL) and API key (OBSIDIAN_API_KEY). The Obsidian Local REST API plugin offers two connection types:

1. Encrypted (HTTPS):

   • Uses secure https:// endpoint (e.g., https://127.0.0.1:27124)
   • Requires OBSIDIAN_VERIFY_SSL=false for self-signed certificates

2. Non-encrypted (HTTP) - Recommended:

   • Uses http:// endpoint (e.g., http://127.0.0.1:27123)
   • Simpler setup, no SSL verification needed

Multi-Vault Mode

For multi-vault mode, configure each vault individually in the OBSIDIAN_VAULTS JSON array with its own API key and base URL. Each vault can use either HTTP or HTTPS as needed.

Example configurations:

Single-vault with HTTP:

"env": {
  "MCP_AUTH_KEY": "your-generated-mcp-auth-key",
  "OBSIDIAN_API_KEY": "your-obsidian-api-key",
  "OBSIDIAN_BASE_URL": "http://127.0.0.1:27123"
}

Multi-vault configuration:

"env": {
  "MCP_AUTH_KEY": "your-generated-mcp-auth-key",
  "OBSIDIAN_VAULTS": "[{\"id\":\"work\",\"name\":\"Work\",\"apiKey\":\"work-key\",\"baseUrl\":\"http://127.0.0.1:27123\"},{\"id\":\"personal\",\"name\":\"Personal\",\"apiKey\":\"personal-key\",\"baseUrl\":\"http://127.0.0.1:27122\"}]"
}

Local MCP Client Settings (Optional)

Note: For Claude.ai Remote MCP integration, skip this section and use the Tailscale Remote Access Setup instead.

For local MCP clients (e.g., Cline), add to your settings (e.g., cline_mcp_settings.json):

Single-vault configuration:

{
  "mcpServers": {
    "obsidian-mcp-server": {
      "command": "node",
      "args": ["/path/to/your/obsidian-mcp-server-enhanced/dist/index.js"],
      "env": {
        "MCP_AUTH_KEY": "your-generated-mcp-auth-key",
        "OBSIDIAN_API_KEY": "your-obsidian-api-key",
        "OBSIDIAN_BASE_URL": "http://127.0.0.1:27123",
        "OBSIDIAN_ENABLE_CACHE": "true"
      }
    }
  }
}

Multi-vault configuration:

{
  "mcpServers": {
    "obsidian-mcp-server": {
      "command": "node",
      "args": ["/path/to/your/obsidian-mcp-server-enhanced/dist/index.js"],
      "env": {
        "MCP_AUTH_KEY": "your-generated-mcp-auth-key",
        "OBSIDIAN_VAULTS": "[{\"id\":\"work\",\"name\":\"Work Vault\",\"apiKey\":\"work-api-key\",\"baseUrl\":\"http://127.0.0.1:27123\"},{\"id\":\"personal\",\"name\":\"Personal Vault\",\"apiKey\":\"personal-api-key\",\"baseUrl\":\"http://127.0.0.1:27122\"}]",
        "OBSIDIAN_ENABLE_CACHE": "true"
      }
    }
  }
}

🌐 Remote Access Setup (Tailscale)

For remote access to your Obsidian vault from anywhere, you can use Tailscale to securely expose your MCP server over the internet.

Prerequisites

1. Tailscale Account: Sign up at tailscale.com
2. Tailscale Installed: Install Tailscale on your machine running the MCP server
3. Tailscale Funnel Enabled: Enable Tailscale Funnel for your account

Setup Steps

1. Generate MCP Auth Key:

   openssl rand -hex 32
   

2. Configure Environment: Set up your .env file with the generated key:

   MCP_AUTH_KEY=your-generated-auth-key
   MCP_TRANSPORT_TYPE=http
   MCP_HTTP_PORT=3010
   MCP_HTTP_STATELESS=true
   

3. Configure Vaults: Set up single or multi-vault configuration (see Multi-Vault Configuration)

4. Start the MCP Server:

   npm run build && npm run start:http
   

5. Enable Tailscale Funnel:

   tailscale funnel 3010
   

6. Get Your Public URL: Check your Tailscale device URL:

   tailscale status --self | grep "Funnel on"
   

Claude.ai Remote MCP Configuration

Add to your Claude.ai Remote MCP servers using your MCP authentication key:

Single-vault setup:

{
  "url": "https://your-device.your-tailnet.ts.net/mcp?api_key=your-mcp-auth-key",
  "name": "Obsidian Vault"
}

Multi-vault setup:

{
  "url": "https://your-device.your-tailnet.ts.net/mcp?api_key=your-mcp-auth-key",
  "name": "Obsidian Multi-Vault"
}

Authentication Note: Claude.ai Remote MCP uses the MCP_AUTH_KEY for server authentication. Individual vault operations use the vault-specific API keys configured in your environment.

Security Considerations

• Dual Authentication: MCP server authentication via MCP_AUTH_KEY, vault authentication via individual API keys
• Tailscale Encryption: All traffic is encrypted end-to-end by Tailscale
• Private Network: Only you can access the server through your Tailscale network
• Automatic SSL: Tailscale Funnel provides automatic HTTPS certificates
• Vault Isolation: Each vault uses its own API key for secure access control

Example Usage

Once set up, you can use tools remotely from Claude.ai:

Single-vault commands (uses default vault):

Use obsidian_task_query to show me tasks due today with format="table"

Multi-vault commands (specify vault):

Use obsidian_task_query with vault="work" to show me work tasks due today

Use obsidian_read_file with filePath="daily-note.md" and vault="personal" 

Use obsidian_dataview_query with vault="work" to run: TABLE file.name FROM #meeting WHERE file.cday = date(today)

🚀 Pro Tip: For production use, set up automatic startup on boot so your server and Tailscale Funnel start automatically without manual intervention.

Project Structure

The codebase follows a modular structure within the src/ directory:

src/
├── index.ts           # Entry point: Initializes and starts the server
├── config/            # Configuration loading (env vars, package info)
│   └── index.ts
├── mcp-server/        # Core MCP server logic and capability registration
│   ├── server.ts      # Server setup, transport handling, tool/resource registration
│   ├── resources/     # MCP Resource implementations (currently none)
│   ├── tools/         # MCP Tool implementations (subdirs per tool)
│   └── transports/    # Stdio and HTTP transport logic, auth middleware
├── services/          # Abstractions for external APIs or internal caching
│   ├── obsidianRestAPI/ # Typed client for Obsidian Local REST API
│   └── vaultManager/    # Multi-vault configuration and service management
├── types-global/      # Shared TypeScript type definitions (errors, etc.)
└── utils/             # Common utility functions (logger, error handler, security, etc.)

For a detailed file tree, run npm run tree or see docs/tree.md.

Vault Cache Service

This server includes an intelligent in-memory cache designed to enhance performance and resilience when interacting with your vault.

Purpose and Benefits

• Performance: By caching file content and metadata, the server can perform search operations much faster, especially in large vaults. This reduces the number of direct requests to the Obsidian Local REST API, resulting in a snappier experience.
• Resilience: The cache acts as a fallback for the obsidian_global_search tool. If the live API search fails or times out, the server seamlessly uses the cache to provide results, ensuring that search functionality remains available even if the Obsidian API is temporarily unresponsive.
• Efficiency: The cache is designed to be efficient. It performs an initial build on startup and then periodically refreshes in the background by checking for file modifications, ensuring it stays reasonably up-to-date without constant, heavy API polling.

How It Works

1. Initialization: When enabled, the VaultCacheService builds an in-memory map of all .md files in your vault, storing their content and modification times.
2. Periodic Refresh: The cache automatically refreshes at a configurable interval (defaulting to 10 minutes). During a refresh, it only fetches content for files that are new or have been modified since the last check.
3. Proactive Updates: After a file is modified through a tool like obsidian_update_file, the service proactively updates the cache for that specific file, ensuring immediate consistency.
4. Search Fallback: The obsidian_global_search tool first attempts a live API search. If this fails, it automatically falls back to searching the in-memory cache.

Configuration

The cache is enabled by default but can be configured via environment variables:

• OBSIDIAN_ENABLE_CACHE: Set to true (default) or false to enable or disable the cache service.
• OBSIDIAN_CACHE_REFRESH_INTERVAL_MIN: Defines the interval in minutes for the periodic background refresh. Defaults to 10.

Tools

The Obsidian MCP Server provides a suite of tools for interacting with your vault(s), callable via the Model Context Protocol.

Multi-Vault Support

All tools support an optional vault parameter to specify which vault to operate on:

• Default Behavior: Without vault parameter, tools use the first configured vault
• Specific Vault: Add vault: "vault-id" to target a specific vault
• Example: obsidian_read_file(filePath="note.md", vault="work")

Tool Name	Description	Key Arguments
obsidian_read_file	Retrieves the content and metadata of a file.	filePath, vault?, format?, includeStat?
obsidian_update_file	Modifies a file by appending, prepending, or overwriting.	targetType, content, vault?, targetIdentifier?, wholeFileMode
obsidian_search_replace	Performs search-and-replace operations in a note.	targetType, replacements, vault?, useRegex?, replaceAll?
obsidian_global_search	Searches the entire vault for content.	query, vault?, searchInPath?, useRegex?, page?, pageSize?
obsidian_list_files	Lists files and subdirectories in a folder.	dirPath, vault?, fileExtensionFilter?, nameRegexFilter?
obsidian_manage_frontmatter	Gets, sets, or deletes keys in a note's frontmatter.	filePath, operation, key, vault?, value?
obsidian_manage_tags	Adds, removes, or lists tags in a note.	filePath, operation, tags, vault?
obsidian_delete_file	Permanently deletes a file from the vault.	filePath, vault?
obsidian_dataview_query	Execute Dataview DQL queries against your vault.	query, vault?, format?
obsidian_task_query	Search and analyze tasks across your vault.	vault?, status?, dateRange?, folder?, priority?, format?
obsidian_periodic_notes	Create and manage daily, weekly, monthly, yearly notes.	operation, periodType, vault?, date?, content?, append?
obsidian_block_reference	Work with block references and heading operations.	operation, filePath, vault?, heading?, content?, blockId?
obsidian_graph_analysis	Analyze note connections and vault relationships.	operation, vault?, filePath?, minConnections?, maxDepth?
obsidian_template_system	Create files from templates with variable substitution.	operation, vault?, templatePath?, targetPath?, variables?
obsidian_smart_linking	Get intelligent link suggestions and recommendations.	operation, vault?, filePath?, content?, maxSuggestions?

Note: All tools support comprehensive error handling, multi-vault routing, and return structured JSON responses.

License

This project is licensed under the Apache License 2.0 - see the LICENSE file for details.

Attribution

This enhanced version is based on the excellent work by cyanheads in the original obsidian-mcp-server project. All core functionality and architecture credit goes to the original author.

Enhancements in this fork:

• Multi-Vault Support: Simultaneous access to multiple Obsidian vaults with vault-specific routing
• Claude.ai Remote MCP integration and compatibility fixes
• Tailscale Funnel integration for secure remote access
• Enhanced HTTP transport layer with authentication separation (MCP_AUTH_KEY)
• Advanced task querying with Tasks plugin integration
• 5 New Advanced Tools: Periodic notes, block references, graph analysis, template system, and smart linking
• Production-ready configuration for enterprise use

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