pubmed-mcp-server
A Model Context Protocol (MCP) server enabling AI agents to intelligently search, retrieve, and analyze biomedical literature from PubMed via NCBI E-utilities. Includes a research agent scaffold. STDIO & HTTP
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Installation
cline_mcp_settings.json).
This configuration uses npx to run the server, which will automatically install the package if not already present.
All environment variables are optional, but recommended for production use. NCBI API key is recommended to avoid rate limiting issues.
```json
{
"mcpServers": {
"pubmed-mcp-server": {
"command": "npx",
"args": ["@cyanheads/pubmed-mcp-server"],
"env": {
"MCP_LOG_LEVEL": "debug",
"MCP_TRANSPORT_TYPE": "http",
"MCP_HTTP_PORT": "3017",
"NCBI_API_KEY": "YOUR_NCBI_API_KEY_HERE"
}
}
}Additional Resources
Software Engineer | Building AI Infrastructure with the Model Context Protocol (MCP)
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